PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G008200.1
Common NameB456_010G008200, LOC105774407
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 343aa    MW: 37905.3 Da    PI: 9.3427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G008200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000152252631255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L+ l+ +      +K + a++L +A+ YIk Lq
  Gorai.010G008200.1 225 RKEKLGDRIAALQHLVAPF-----GKTDTASVLMEAIGYIKFLQ 263
                         67788899999**999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.211213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.04E-5223267No hitNo description
SuperFamilySSF474597.46E-11223275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-9227270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MESENVHHQH QLHHYNQLLV GSSSSSLPCY GVSSSPHSWP PTNTFNTSEF NHNGALLQPW  60
TNNEGTFNNP SQHKLMLKTV SSSFPMLSQS SEFYPNTHNL PPLPTKGSFS HIYPSINISN  120
LNQASSMEAF DLLSPSRLTK NSSFKHYASE DHHHNLASFG HSHQQFQLSN QRLACNNSPS  180
NISSSFNTET LEAKRSGNIL KEAKASTATK KSRLESRACP PFKVRKEKLG DRIAALQHLV  240
APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNR TSRSKHGGSM MEMGNEEETR  300
QDLKSRGLCL VPLSCMSYLT IDNGGGGSSG SFWPPPNFSR GF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452352.10.0PREDICTED: transcription factor bHLH110 isoform X2
SwissprotQ9SFZ36e-61BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A0D2U6R80.0A0A0D2U6R8_G
STRINGPOPTR_0005s25240.19e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-54bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]